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1

Chaste: A test-driven approach to software development for biological modelling

Joe Pitt-Francis, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alexander G. Fletcher, Gary R. Mirams, Philip Murray, James M. Osborne, Alex Walter, S. Jon Chapman, Alan Garny,

Journal:

Computer Physics Communications

Year:

2009

Language:

english

File:

PDF, 1.95 MB

english, 2009

2

A numerical guide to the solution of the bidomain equations of cardiac electrophysiology

Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alan Garny, Joe M. Pitt-Francis, Jonathan P. Whiteley, David J. Gavaghan

Journal:

Progress in Biophysics and Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.09 MB

english, 2010

3

Just Jobs? Organizing for Economic Justice || From the Social Equity Caucus Working Group

Steven Pitts and Joe Brooks

Journal:

Race, Poverty & the Environment

Year:

2007

Language:

english

File:

PDF, 198 KB

english, 2007

4

Inequality Is No Myth

Joe W. Pitts III

Journal:

Foreign Affairs

Year:

2002

Language:

english

File:

PDF, 348 KB

english, 2002

5

The Right Norms

John G. Ruggie, Georg Kell, Joe W. (Chip) Pitts III and Daniel Litvin

Journal:

Year:

2004

Language:

english

File:

PDF, 1.03 MB

english, 2004

6

Bayesian Calibration, Validation and Uncertainty Quantification for Predictive Modelling of Tumour Growth: A Tutorial

Collis, Joe, Connor, Anthony J., Paczkowski, Marcin, Kannan, Pavitra, Pitt-Francis, Joe, Byrne, Helen M., Hubbard, Matthew E.

Journal:

Bulletin of Mathematical Biology

Year:

2017

Language:

english

File:

PDF, 2.64 MB

english, 2017

7

Reply

Pitt, Matthew, Jabre, Joe

Journal:

Year:

2017

Language:

english

File:

PDF, 38 KB

english, 2017

8

Deriving pediatric nerve conduction normal values in the very young (

Jabre, Joe F., Pitt, Matthew C., Smith, Ralph

Journal:

Clinical Neurophysiology

Year:

2020

Language:

english

File:

PDF, 731 KB

english, 2020

9

Post-Subsidy Solar PV Business Models to Tackle Fuel Poverty in Multi-Occupancy Social Housing

Pitt, Joe, Nolden, Colin

Journal:

Year:

2020

File:

PDF, 1.13 MB

2020

10

Development of a functional magnetic resonance imaging simulator for modeling realistic rigid-body motion artifacts

Ivana Drobnjak, David Gavaghan, Endre Süli, Joe Pitt-Francis, Mark Jenkinson

Journal:

Magnetic Resonance in Medicine

Year:

2006

Language:

english

File:

PDF, 806 KB

english, 2006

11

Integrative Biology — the challenges of developing a collaborative research environment for heart and cancer modelling

Sharon Lloyd, Dave Gavaghan, Andrew Simpson, Matthew Mascord, Clint Seneurine, Geoff Williams, Joe Pitt-Francis, David Boyd, Damian Mac Randal, Lakshmi Sastry, Srikanth Nagella, Katie Weeks, Ronald Fo

Journal:

Future Generation Computer Systems

Year:

2007

Language:

english

File:

PDF, 604 KB

english, 2007

12

Molecular design, synthesis, and structure–Activity relationships leading to the potent and selective p56lck inhibitor BMS-243117

Jagabandhu Das, James Lin, Robert V. Moquin, Zhongqi Shen, Steven H. Spergel, John Wityak, Arthur M. Doweyko, Henry F. DeFex, Qiong Fang, Suhong Pang, Sidney Pitt, Ding Ren Shen, Gary L. Schieven, Joe

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2003

Language:

english

File:

PDF, 228 KB

english, 2003

13

The relationship between selected socioeconomic variables and measures of arson: A cross-sectional study

Joe H. Murrey, Robert E. Pitts, Dani A. Smith, Kenneth W. Hollman

Journal:

Fire Technology

Year:

1987

Language:

english

File:

PDF, 1.03 MB

english, 1987

14

Probabilistic risk assessment for snails, slugs, and endangered honeycreepers in diphacinone rodenticide baited areas on Hawaii, USA

John J. Johnston, William C. Pitt, Robert T. Sugihara, John D. Eisemann, Thomas M. Primus, Melvin J Holmes, Joe Crocker, Andy Hart

Journal:

Environmental Toxicology and Chemistry

Year:

2005

Language:

english

File:

PDF, 127 KB

english, 2005

15

Using OXSIM for path planning

Stephen Cameron, Joe Pitt-Francis

Journal:

Journal of Field Robotics

Year:

2001

Language:

english

File:

PDF, 373 KB

english, 2001

16

Multi-scale computational modelling in biology and physiology

James Southern, Joe Pitt-Francis, Jonathan Whiteley, Daniel Stokeley, Hiromichi Kobashi, Ross Nobes, Yoshimasa Kadooka, David Gavaghan

Journal:

Progress in Biophysics and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 1.25 MB

english, 2008

17

Conformational studies on the pancreatic polypeptide hormone family

Ian D. GLOVER, David J. BARLOW, James E. PITTS, Stephen P. WOOD, Ian J. TICKLE, Thomas L. BLUNDELL, Kazuhiko TATEMOTO, Joe R. KIMMEL, Axel WOLLMER, Wolfgang STRASSBURGER, You-Shang ZHANG

Journal:

Year:

1984

Language:

english

File:

PDF, 613 KB

english, 1984

18

Electrophysiological effects of cocaine on central monoaminergic neurons

David K Pitts, Joe Marwah

Journal:

European Journal of Pharmacology

Year:

1986

Language:

english

File:

PDF, 251 KB

english, 1986

19

Reciprocal pre- and postsynaptic actions of cocaine at a central noradrenergic synapse

David K. Pitts, Joe Marwah

Journal:

Experimental Neurology

Year:

1987

Language:

english

File:

PDF, 761 KB

english, 1987

20

Effects of cocaine on the electrical activity of single noradrenergic neurons from locus coeruleus

David K. Pitts, Joe Marwah

Journal:

Year:

1986

Language:

english

File:

PDF, 548 KB

english, 1986

21

Computational assessment of drug-induced effects on the electrocardiogram: from ion channel to body surface potentials

Zemzemi, Nejib, Bernabeu, Miguel O, Saiz, Javier, Cooper, Jonathan, Pathmanathan, Pras, Mirams, Gary R, Pitt-Francis, Joe, Rodriguez, Blanca

Journal:

British Journal of Pharmacology

Year:

2013

Language:

english

File:

PDF, 3.75 MB

english, 2013

22

Effects of Negative Pressure Wound Therapy on Healing of Free Full-Thickness Skin Grafts in Dogs

Stanley, Bryden J., Pitt, Kathryn A., Weder, Christian D., Fritz, Michele C., Hauptman, Joe G., Steficek, Barbara A.

Journal:

Veterinary Surgery

Year:

2013

Language:

english

File:

PDF, 548 KB

english, 2013

23

[Undergraduate Topics in Computer Science] Guide to Scientific Computing in C++ || Getting Started

Pitt-Francis, Joe, Whiteley, Jonathan

Year:

2012

Language:

english

File:

PDF, 354 KB

english, 2012

24

[Undergraduate Topics in Computer Science] Guide to Scientific Computing in C++ || Developing Classes for Linear Algebra Calculations

Pitt-Francis, Joe, Whiteley, Jonathan

Year:

2012

Language:

english

File:

PDF, 323 KB

english, 2012

25

[Undergraduate Topics in Computer Science] Guide to Scientific Computing in C++ || Flow of Control

Pitt-Francis, Joe, Whiteley, Jonathan

Year:

2012

Language:

english

File:

PDF, 322 KB

english, 2012

26

[Undergraduate Topics in Computer Science] Guide to Scientific Computing in C++ ||

Pitt-Francis, Joe, Whiteley, Jonathan

Year:

2012

Language:

english

File:

PDF, 1.83 MB

english, 2012

27

Stochasticity in Action Potential duration Enhances Dispersion of Repolarisation at Fast Pacing Rates

Walmsley, John, Burrage, Kevin, Pitt-Francis, Joe M., Mirams, Gary R., Rodriguez, Blanca

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 95 KB

english, 2012

28

Major Developments at the UN Commission on Human Rights in 1992

Joe W. Pitts III and David Weissbrodt

Journal:

Human Rights Quarterly

Year:

1993

Language:

english

File:

PDF, 7.21 MB

english, 1993

29

On the Law of Nationsby Daniel Patrick Moynihan

Review by: Joe W. Pitts III

Journal:

The International Lawyer

Year:

1991

Language:

english

File:

PDF, 287 KB

english, 1991

30

Multiscale cardiac modelling reveals the origins of notched T waves in long QT syndrome type 2

Sadrieh, Arash, Domanski, Luke, Pitt-Francis, Joe, Mann, Stefan A, Hodkinson, Emily C, Ng, Chai-Ann, Perry, Matthew D, Taylor, John A, Gavaghan, David, Subbiah, Rajesh N, Vandenberg, Jamie I, Hill, Ad

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 738 KB

english, 2014

31

Discourse Analysis of a Telephone Conversation

Pitt, Joe Harrison

Journal:

Language Matters

Year:

1993

Language:

english

File:

PDF, 834 KB

english, 1993

32

GEOMETRIC MODELLING AND ROBOTICS

CAMERON, STEPHEN, PITT-FRANCIS, JOE

Journal:

International Journal of Shape Modeling

Year:

2000

Language:

english

File:

PDF, 1.24 MB

english, 2000

33

A parallel implementation of an off-lattice individual-based model of multicellular populations

Harvey, Daniel G., Fletcher, Alexander G., Osborne, James M., Pitt-Francis, Joe

Journal:

Computer Physics Communications

Year:

2015

Language:

english

File:

PDF, 1.09 MB

english, 2015

34

Acquisition of discourse

Pitt, Joe Harrison

Journal:

English Usage in Southern Africa

Year:

1992

Language:

english

File:

PDF, 743 KB

english, 1992

35

Multimodal Imaging Techniques for the Extraction of Detailed Geometrical and Physiological Information for Use in Multi-Scale Models of Colorectal Cancer and Treatment of Individual Patients

Pitt-Francis, Joe, Chen, Dan, Slaymaker, Mark, Simpson, Andrew, Brady, Michael, van Leeuwen, Ingeborg, Reddington, Fiona, Quirke, Phil, Brown, Gina, Gavaghan, David

Journal:

Computational and Mathematical Methods in Medicine

Year:

2006

Language:

english

File:

PDF, 281 KB

english, 2006

36

Ras-GTP dimers activate the Mitogen-Activated Protein Kinase (MAPK) pathway

Nan, Xiaolin, Tamgüney, Tanja M., Collisson, Eric A., Lin, Li-Jung, Pitt, Cameron, Galeas, Jacqueline, Lewis, Sophia, Gray, Joe W., McCormick, Frank, Chu, Steven

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

37

Application of stochastic phenomenological modelling to cell-to-cell and beat-to-beat electrophysiological variability in cardiac tissue

Walmsley, John, Mirams, Gary R., Pitt-Francis, Joe, Rodriguez, Blanca, Burrage, Kevin

Journal:

Journal of Theoretical Biology

Year:

2015

Language:

english

File:

PDF, 1.38 MB

english, 2015

38

Evaluating the Cost and Process Performance of Carbon Alternatives to Methanol

Bilyk, Katya, Rohrbacher, Joe, Bruton, Theresa, Pitt, Paul, Latimer, Ron

Journal:

Proceedings of the Water Environment Federation

Year:

2009

Language:

english

File:

PDF, 1.42 MB

english, 2009

39

Full-Scale Dynamic Testing Advances Fundamental Understanding of Denitrification Filters

Bilyk, Katya, Takács, Imre, Rohrbacher, Joe, Pitt, Paul, Latimer, Ron, Dold, Peter

Journal:

Proceedings of the Water Environment Federation

Year:

2008

Language:

english

File:

PDF, 599 KB

english, 2008

40

BNR/ENR Model Calibration Experience Indicates Deviations in Key Modeling Parameters

Latimer, Ron J., Pitt, Paul A., Rohrbacher, Joe

Journal:

Proceedings of the Water Environment Federation

Year:

2007

Language:

english

File:

PDF, 101 KB

english, 2007

41

Troubleshooting Biological Phosphorus Removal – The Middle Atlantic Experience

Rohrbacher, Joe, Bilyk, Katya, Latimer, Ron, Taylor, Ron, Pitt, Paul

Journal:

Proceedings of the Water Environment Federation

Year:

2008

Language:

english

File:

PDF, 647 KB

english, 2008

42

City of Tallahassee's T.P. Smith WRF Upgrade from Secondary Limits to ENR Nitrogen Limits

Latimer, Ron J., Pitt, Paul A., Griborio, Alonso, Pfeffer, Kurt A., Cheatham, Joe, Lee, Sondra

Journal:

Proceedings of the Water Environment Federation

Year:

2011

Language:

english

File:

PDF, 2.45 MB

english, 2011

43

21st Century Sustainability Metrics: Assessing the Environmental Impacts of Wastewater Treatment

Bilyk, Katya, Rohrbacher, Joe, Banerjee, Joyeeta, Henn, Brian, Mehrotra, Sandeep, Pitt, Paul

Journal:

Proceedings of the Water Environment Federation

Year:

2009

Language:

english

File:

PDF, 221 KB

english, 2009

44

VENI, VIDI, Voronoi: Attacking Viruses with Spherical Voronoi Diagrams

Reddy, Tyler, Hemsley, Ross, Edmondson, Edd, Nowaczyk, Nikolai, Pitt-Francis, Joe, Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 42 KB

english, 2016

45

Factors for Successfully Reducing Effluent Total Nitrogen Below 2.5 mg/L using Conventional Nutrient Removal Strategies

Rohrbacher, Joe, Bilyk, Katya, Matthews, Rosalyn, Pitt, Paul, Latimer, Ronald J.

Journal:

Proceedings of the Water Environment Federation

Year:

2013

Language:

english

File:

PDF, 2.23 MB

english, 2013

46

BNR/ENR Model Calibration Experience Indicates Deviations in Key Modeling Parameters and Lessons Learned

Latimer, Ron J., Pitt, Paul A., Rohrbacher, Joe, Bilyk, Katya

Journal:

Proceedings of the Water Environment Federation

Year:

2013

Language:

english

File:

PDF, 447 KB

english, 2013

47

A Framework for Real-Time Process Control

Bilyk, Katya, Rohrbacher, Joe, Balzer, Bill, Latimer, Ron, Pitt, Paul, Stone, Alan, Bott, Charles, Baumler, Rick

Journal:

Proceedings of the Water Environment Federation

Year:

2012

Language:

english

File:

PDF, 1.70 MB

english, 2012

48

Evaluation of Alternative Supplemental Carbon Sources at Four BNR Facilities

Rohrbacher, Joe, Bilyk, Katya, Bruton, Theresa, Pitt, Paul, Latimer, Ron

Journal:

Proceedings of the Water Environment Federation

Year:

2009

Language:

english

File:

PDF, 1.06 MB

english, 2009

49

BNR/ENR MODEL CALIBRATION EXPERIENCE INDICATES DEVIATIONS IN KEY MODELING PARAMETERS

Latimer, Ron J., Pitt, Paul A., Rohrbacher, Joe

Journal:

Proceedings of the Water Environment Federation

Year:

2007

Language:

english

File:

PDF, 196 KB

english, 2007

50

Evaluation of Wet Weather Strategies and Clarifier Optimization Using State-of-the-Art Tools

Griborio, Alonso, Rohrbacher, Joe, Taylor, Ronald, Pitt, Paul, Latimer, Ron

Journal:

Proceedings of the Water Environment Federation

Year:

2008

Language:

english

File:

PDF, 526 KB

english, 2008